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psi

PSI calculation script

pyclustering

pyclustring is a Python, C++ data mining (clustering, graph coloring algorithms, oscillatory networks, neural networks, etc.) library.

pygraphviz

Python interface to Graphviz graph drawing package

pygubu

A simple GUI designer for the python tkinter module

pypandoc

Thin wrapper for "pandoc" (MIT)

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python

All Algorithms implemented in Python

python3-cookbook

《Python Cookbook》 3rd Edition Translation

pyuniprot

Python package to query and analyse UniProt

qix

Machine Learning、Deep Learning、PostgreSQL、Distributed System、Node.Js、Golang

qtconsole

Jupyter Qt Console

r-igraph-network-workshop-netscix

NetSciX 2016 workshop on network analysis and visualization with R and igraph

rapsearch2

Reduced Alphabet based Protein similarity Search

rcharts

Interactive JS Charts from R

record

reveal.js

The HTML Presentation Framework

rigraph

igraph R package

rmaps

Interactive Maps from R

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqlib

RNA-Seq pipeline

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rss

抓取微信公众号并输出成RSS

rss-1

weibo weixin zhihu rss RSS工厂，生成微博，微信公众号，知乎日报RSS

rthreejs

Three.js widgets for R and shiny

sailfish-cir

a pipeline for quantification of circular RNA.

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

scasat

Scasat is a single cell ATAC-seq preprocessing and analysis pipeline

scikit-learn

scikit-learn: machine learning in Python