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20180320_techtalk_tensorflowintro

Slides and additional material for an introductory talk on neural networks and building them using TensorFlow

assembler_benchmark_new_submissions

A mostly empty repository that collects submissions to a collective benchmarking effort as pull requests

basecallerbenchmark

Code for a MinION sequencer benchmark

basecallertrainer

RNN interpretation of MinION raw signal using Tensorflow

baseless

baseless_16s_db

Database of neural networks for baseLess 16S-based detection

bioconda-recipes

Conda recipes for the bioconda channel.

chop_n_drop_simulation

Simulation pipeline for a novel single-molecule protein fingerprinting method

coa_classifier

deepfret-gui

doc

Documentation of the Snakemake-Profiles project.

ebfret-gui

ebFRET (GUI version) – Empirical Bayes HMM analysis for multiple single-molecule FRET time series

fret_x_fingerprinting_simulation

fretboard

Flexible semi-supervised classification for FRET traces

ibp

image_format_tests

Just a test repository, to see whether images of different formats work in readme files

imax-fret

local-sensitivity-hashing

Local sensitivity hashing

minimap2

A fast pairwise aligner for genomic and spliced nucleotide sequences

models

Models built with TensorFlow

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nanoporestatefinder

An R package for nanopore trace analysis, developed for the Maglia lab (Groningen University, The Netherlands)

poretally

Benchmark MinION assembler pipelines and publish your results in a heartbeat!

poretally_collective_submissions

A mostly empty repository that collects submissions to a collective benchmarking effort as pull requests

poretally_example

example of a report generated by poreTally

poretallycommunity

Summaries of submitted poreTally benchmark results will periodically be posted here!

rtd-tutorial