Comments (4)
1.1. Split tximeta to a separate script, and generate SummarizedExperiments
1.2. Turn to markdowns the .R scripts to add to the SummarizedExperiments
1.3. Merge outputs for shiny, add MDS plot
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First draft and structure set up in 282ebe3
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DRIMSeq Rmd added in ed977b8
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- Add results of edgeR/DRIMSeq to SummarizedExperiment objects and save the results
- Send the SE object into shiny preparation Rmd
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Related Issues (20)
- Error running example files HOT 3
- issue when setting up and running the example data HOT 5
- Iteration over edgeR fails upon changes to metadata.txt HOT 4
- Issues Running Example Dataset HOT 2
- column-spillover in DGE result .txt file HOT 2
- Update wiki Home page command HOT 1
- Detailed instructions for MacOS installation? HOT 4
- Could not install R packages HOT 6
- `Ncpu` in `install.packages()` ? HOT 1
- CalledProcessError in EdgeR HOT 5
- Input exception wit SE reads HOT 10
- New commit breaks conda activation? HOT 12
- tximeta error HOT 1
- error in rule bigwig HOT 4
- About threads/cores HOT 3
- Error when running the example dataset HOT 7
- Gencode / Ensembl HOT 5
- trouble with running the example dataset HOT 4
- Error when using bacterial fa and gtf file in ARMOR HOT 26
- trouble running the pipeline for a bacterial species HOT 13
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