csbl-usp Goto Github PK

analysis_example

cemitool

Co-Expression Module Identification Tool (CEMiTool) official repository

code-r

collapser

covid19_model

Shiny App for decision making based on this blogpost (https://medium.com/@tomaspueyo/coronavirus-act-today-or-people-will-die-f4d3d9cd99ca)

csbl-usp.github.io

csbl_chikungunya_edger

csbltools

This package is intended to unify the most commonly used functions in the CSBL.

evolution_of_knowledge

Repository containing all scripts and files necessary to reproduce the analyses and figures in the paper "Evolution of knowledge on genes of inflammatory, infectious and psychiatric diseases: meta-research of the scientific literature using IBM Watson for Drug Discovery."

fcbf

Repository for R package to perform Fast Correlation Based Filtering (Information Theory based feature selection) with applications to single-cell and bulk to transcriptomic analysis set ups.

fcoex

The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.

file_example

inflamma_repositioning

Repository containing the scripts used to produce the results reported in the paper "Drug repositioning for chronic inflammatory diseases using a network medicine approach"

mdp

metavolcanor

Gene expression meta-analysis visualization tool

networgly

Fast network visualization with WebGL

nipt

opentargets_drug_repositioning

The scripts in this repository perform the following tasks necessary for drug repositioning using Open Targets:

pipelines

Bioinformatics pipelines

pubscore

R package for calculating the literature score for a given gene / gene list in relation to the biomedical literature.

reannotator-microarray-probes

rebola

sciencefamily

Series of skills for laboratory use of Alexa Voice User Interface implemented using Node.js

wdd_drug_repositioning

Script to perform drug repositioning using Watson for Drug Discovery data