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Covert Lab's Projects

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Stochastic simulations in python

borealis icon borealis

Run FireWorks workflows in Google Cloud.

celltk icon celltk

Live-cell image analysis toolkit

evolvetransport icon evolvetransport

scalable construction and optimization of kinetic transport systems for E. coli

ktr_model icon ktr_model

Matlab code for the mathematical model of the kinase translocation reporter

networkpainter icon networkpainter

Web-based software program creating and animating signaling network diagrams

orjson icon orjson

Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

parest icon parest

Workflow for E. coli glycolysis ODE model parameter estimation.

vatic icon vatic

Efficiently Scaling Up Video Annotation with Crowdsourced Marketplaces. IJCV 2012

wcecoli-colony-analysis icon wcecoli-colony-analysis

Code and analysis for the "Whole-Colony Modeling of Escherichia coli" that is currently in preparation.

wholecellkb icon wholecellkb

WholeCellKB is a collection of free, open-source model organism databases designed specifically to enable comprehensive, dynamic simulations of entire cells and organisms.

wholecellsimdb icon wholecellsimdb

WholeCellDB is a hybrid SQL/HDF database for storing and retrieving whole-cell model predictions.

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