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arpir

Automatic RNA-Seq Pipelines with Interactive Report

atlas

Apache Atlas

atlas-1

ATLAS - Three commands to start analysing your metagenome data

bgassembly

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

common_analysis_scripts

cyanobacteriarnaseqpipeline

density-mapr

An R workflow for creating heat-maps representing the spatial association between two genomic feature sets

dwgsim

Whole Genome Simulator for Next-Generation Sequencing

effector-prediction-pipeline

Snakemake pipeline for the effector protein prediction

enhancer-promoter-interaction

eumicrobe-db-client

eumicrobedb-ui

gabtk

Genome Assembly Benchmark Tool Kit

gabtk_accessories

genome assembler benchmarking

gal

galeupy

gggenomes

A grammar of graphics for comparative genomics

hmm-model

iicb-phase1

iicb_testing

interactivecomplexheatmap

Make Interactive Complex Heatmaps

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

machine_learning_nostoc

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

motiffun

An R package for searching user defined motif with functional annotation features

predict-diabetic-through-regression-model

ragtag

A collection of command-line utilities for improving modern genome assemblies

rnaseq_read_summerization_pipeline-for-eukaryotic-dataset

Snakemake pipeline for eukaryotic RNAseq data analysis which assigns the genomic features to the mapped (cleaned and filtered) reads that were generated from RNA sequencing experiment (raw reads)

rnaseq_read_summerization_pipeline-for-prokaryotic_dataset

Snakemake pipeline for prokaryotic RNAseq data analysis which assigns the genomic features to the mapped (cleaned and filtered) reads that were generated from RNA sequencing experiment (raw reads)