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calindel

tool to calculate substitutions, indels etc

cheui

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

cheui-public

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

creole

Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads

drug_screening

epydoor

Epitope discovery pipeline for RNA-seq

flipper

Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing

humming

Tools for the comparison of long-read mappings to a genome reference and annotations

ig_calculator

Set of scripts for obtaining Infomration Gain values from a set of features

isotope

ISOform-guided prediction of epiTOPEs in cancer

isotope_supplementary

Supplementary repository for file storage

junckey

Collection of scripts for computing PSI of junction clusters

latentevents

Latent Dirichlet Allocation on alternative splicing events.

meteore

Automatic DNA methylation detection from nanopore tools and their consensus model

mira

Mutation Identification for RNA Alterations

mosea

Motif Scan and Enrichment Analysis (MoSEA)

orqas

ORF Quantification pipeline for Alternative Splicing

r2dtool

Analyse RNA feature distributions.

radian

Nanopore direct RNA basecaller

rattle

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

reorientexpress

Transcriptome long-read orientation with Deep Learning

riser

Biochemical-free targeting of RNA classes during direct RNA sequencing

risk_model_app

Shiny App to predict a risk score for infant B-ALL patients

serpent

serpent-analysis

splicing_browser

Browser to present splicing events and junctions arround the genome

suppa

SUPPA: Fast quantification of splicing and differential splicing

suppa_supplementary_data

Supplementary data

svm-bpfinder

txannotate