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Dummy_Model.h5 about mhcseqnet HOT 4 CLOSED

cmb-chula avatar cmb-chula commented on August 23, 2024
Dummy_Model.h5

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Comments (4)

cmbcu avatar cmbcu commented on August 23, 2024 1

You should replace Dummy_Model.h5 with the actual amino acid representation model "embedding_weight_merged_5_d6.h5" which is located in the same folder.

We just updated the sample code to reflect this change as well.

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cmbcu avatar cmbcu commented on August 23, 2024

Sorry for very late response. The Dummy_Model.h5 is in fact not used anywhere. The person who created the sample script intended to train another amino acid representation model but eventually dropped it. Dummy_Model.h5 is just a temporary file for this purpose.

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saskra avatar saskra commented on August 23, 2024

Thanks! Does this mean, I can just leave the line with the "amino_acid_representation_path" in the example I cited above? Or do I have to replace it with something?

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saskra avatar saskra commented on August 23, 2024

https://github.com/cmbcu/MHCSeqNet/blob/5e3740419ba9dd7e998f4be3293129a3e50a4b43/Sample/AminoAcidRepresentationTrainingExample.py#L3

Is the file "Data/HumanProtein_cleaned.txt" available to train my own Amino Acid Representation Model?

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