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2pstim

Custom-written code for visual stimulus presentation (Clark et al. 2011)

antspy

Advanced Normalization Tools in Python

bifrost

Template building and multi-modal registration

brainsss

Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)

brainsss2

refactor of the brainsss repo for 2-photon imaging analysis

brezovec_volition_2023

brukerbridge

containers

Commonly used containers and scripts to build them

dataflow

fictrac

A webcam-based method for tracking spherical motion and generating fictive animal paths.

flyrpc

Library for managing server/client interactions

flystim

Visual stimulus generator for neuroscience experiments

flyvr

goal-driven-anns

ipp-tools

Collection of IPyParallel tools and helper scripts

l1l2-deblur

labpack

Lab-specific stimuli, config, and resources to be used with stimpack

lightcrafter

modules

Custom `lmod` modules for use on Sherlock

multisensory-freezing

python scripts for the ball rig with auditory and visual stimuli

multistim

server/client and gui for presenting audio and visual stimuli to fruit flies

neurite

Neural networks toolbox focused on medical image analysis

pasna-acr-currbio2021

Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.

pijm

PIJM is just matplotlib

pystrum

A general library of python tools

sleep-analysis

Library for analyzing Drosophila Activity Monitor data

stimpack

Precise and flexible generation of stimuli for neuroscience experiments.

visanalysis

Analysis environment for visprotocol imaging experiments

visprotocol

Visual stimulation protocol and metadata handler for flystim experiments

voxelmorph

Unsupervised Learning for Image Registration