clairemerot Goto Github PK
Name: Claire Mérot
Type: User
Bio: Evolutionary biologist Researcher CNRS ECOBIO, Université Rennes 1, France
Claire Mérot's Projects
angsd_pipeline
assembly_sv
A pipeline used to detect structural variants between two de novo assemblies of Lake Whitefish (dwarf vs. normal)
coelopa_fastsim
Coelopa inversion selection simulation in Rust
corvid_svpopgen
gawn
Genome Annotation Without Nightmares
genotyping_sv
Genotype SV in multiple samples sequenced with short-reads, using a catalog of SV
giraffe-sv-paper
go_enrichment
Transcripts annotation and GO enrichment Fisher tests
intro2popgenomics
Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
lepmap3_pipeline
local_pca
Methods for examining PCA locally along the genome.
long_read_sv
Scripts for refining vcf
mumandco
physalia_adaptation_course
popgencode
Various bits of code for population genetic methods used in my publications
selection_analysis
signet
An R package to detect selection in biological pathways
sr_sv
detecting SVs based on shorts-reads
stacks_workflow
RADseq workflow built around STACKS
wgs_sample_preparation
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
wold_phd_thesis
Presented here are the tools and strategies implemented for short-read SV discovery (Chapter 3), a population genomics study (Chapter 4) and genome graph construction (Chapter 5).
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