cjbattey Goto Github PK

adaptr

An R app for wright-fisher simulations with time-variant genotype fitness

analysis

Analysis of inference methods on standard population models

anhu

demographic and climate niche analysis of range expansions in the Anna's Hummingbird

anolis

anolis_elevation_shift

scripts for analysis of elevation range shifts in Puerto Rican Anolis lizards

biol610

intro to programming for IE2 evolution students

coalescer

A native R simulator for the discrete coalescent

colordict

an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"

driftr

population genetic simulations with R and Shiny

ggforce

Accelerating ggplot2

halibut

ML classification of introgressed genomic regions using unphased genotypes (F1 from https://github.com/kern-lab/FILET)

ldsim

An R/shiny simulation app for teaching linkage disequilibrium

linckbattey2017_maf_clustering

R scripts used in "Minor allele frequency thresholds strongly affect population structure inference with genomic datasets" (Linck & Battey 2017, doi: https://doi.org/10.1101/188623)

locator

Locator-- deep learning prediction of geographic location from individual genome sequences

migration_mapper

Making sweet gifs from eBird data

misc

nbp

Seattle Audubon Society Neighborhood Bird Project

nichetrackr

Do migrant hummingbirds track a climatic niche through the seasons?

pdf2pdf

does the magical pdf-to-pdf conversion popular in academic journal submission sites

popsim

population genetic simulations inspired by popG (http://evolution.gs.washington.edu/popgen/popg.html)

popvae_analysis_scripts

scripts used for analyses and plotting described in the popvae manuscript

pyslim

Tools for dealing with tree sequences coming to and from SLiM.

radplots

Functions for plotting data generated by RAD sequencing - mostly dealing with the output from pyRAD

rseminar_gis

selasphorus

selasphorus_evolution

spacetree

tools for visualizing spatial genealogies

stacks_scripts

R and shell scripts for dealing with STACKS assemblies

structure_parallel

R script to run multiple Structure analyses in parallel.

structureplotter

a shiny site for plotting output from popgen Bayesian clustering software (STRUCTURE/Admixture/etc)