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Hi 👋, I'm Dmitry Avtonomov

  • Original author of BatMass and FragPipe
  • Working in the field of mass spectrometry based :electron: 🔬 proteomics 🧬 🧫
  • ❤️ data visualisations.
  • My projects (with source code and publication links): https://dmtavt.com/project/

Dmitry Avtonomov's Projects

curvesapi icon curvesapi

Java implementation of various mathematical curves that define themselves over a set of control points.

dann icon dann

An Artificial Intelligence Library written in Java

dataobjecttest icon dataobjecttest

When wrapping a custom DataNode around a DataObject, icons and actions are lost if a lookup is provided in the constructor.

deltamass icon deltamass

DeltaMass: view and interrogate open proteomics search data

dia-umpire icon dia-umpire

Computational analysis for mass spectrometry-based proteomics data

faiss icon faiss

A library for efficient similarity search and clustering of dense vectors.

fastdtw icon fastdtw

O(n) approximate Dynamic Time Warping implementation in java

fcwt icon fcwt

The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.

fftsharp icon fftsharp

A .NET Standard library for computing the Fast Fourier Transform (FFT) of real or complex data

flashida icon flashida

Intelligent Data Acquisition for Top-down proteomics on Thermo tribrid platform

fragpipe icon fragpipe

A simple cross-platform UI for running MSFragger proteomic search engine (and post processing results with Peptide/Protein Prophets via Philosopher)

ga-beacon icon ga-beacon

Google Analytics collector-as-a-service (using GA measurement protocol).

gitflow-avh icon gitflow-avh

AVH Edition of the git extensions to provide high-level repository operations for Vincent Driessen's branching model

gitignore icon gitignore

The largest collection of useful .gitignore templates

grppr icon grppr

Grouper - software for general 2D isotopic grouping. Can be applied to LC-MS (liquid chromatography) or IM-MS (ion mobility) datasets.

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