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antismash

antiSMASH

antismash_htc

antismash_tutorial

bact-multi-locus

bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

blastplotter

chevrm.github.io

cmine_suite

core_genome_placer

core_species_tree

Generation of bacterial species trees based on conserved core gene families

cv

deep-rules

Ten Simple Rules for Deep Learning in Biology

demo

dendrograms for modular biosynthetic pathways

designsg

dotmapper

Dotplot heatmaps

evomining3

ilmn_masurca

ilmn_ray

ilmn_spades

insect_streptomyces_chevrette_et_al

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

kopilot

kopilot is a suite of scripts meant to make output from the KOBAS pathway annotation pipeline human readable and easily imported into statistical software, such as R. It also allows for quick subsetting of reads.

meta_assembly_pipe

mrmuscle

MrMuscle is a pipeline for the creation of extremely high confidence phylogentic trees leveraging the MUSCLE sequence aligner and MrBayes Bayesian Markov chain Monte Carlo models.

nanoport

Oxford Nanopore Tools

personal_site_pelican

pplacer_binaries

pyparanoid

Rapid and scalable homolog identification for bacterial genomes

rodeo2

This isn't our first RODEO. The new and improved RODEO is written in Python and supports lasso peptide, class I lanthipeptide, sactipeptide and thiopeptide precursor prediction.

scholar_plot