chenmengpin Goto Github PK

10xgenomics

Single cell sequencing analysis

2017_2018-single-cell-rna-sequencing-workshop-ucd_ucb_ucsf

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

2018-developmental-single-cell-rna-sequencing

Scripts for analyzing data from manuscript under revisions

2019-single-cell-rna-sequencing-workshop-ucd_ucsf

2019 single cell RNA sequencing Workshop @ UCD AND UCSF

2019_ochockasegit

2020_wilk_covid

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

basic

是基础也是综合(一系列对象及函数，需要细致的讲解)

batchelor

Clone of the Bioconductor repository for the batchelor package.

bignmf

A Nonnegative Matrix Factorization algorithm based on alternating least squares and coordinate descent.

bioinfo

biscuit_singlecell_imm_icml_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

blca_signature

bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

brc_singlecell_ljames

Analysis of Single Cell sequencing data for L James

brca_mini_atlas_131019

breastcancer

analysis of single cell RNA sequencing data from mammary gland to guide deconvolution of breast cancer patient bulk RNA-seq data

ccrcc_snrna_analysis

cell-seq

single cell sequencing analysis code

cellmet-2018-scrnaseq

Analysis of single-cell RNA-sequencing data described in the paper titled, "Deconstructing adipogenesis induced by beta3-adrenergic receptor activation with single cell expression profiling", published by Burl et al. in Cell Metabolism, 2018.

cellphonedb

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cnvkit_pipeline

call copy number from WES(WXS)

coa-scrnaseq-pipeline

Pipeline for bioinformatic analysis of single cell RNA-sequencing data.

code-for-aplastic-anemia

R codes for analysis scRNA-seq data of HSPCs and T cells from aplastic anemia

computational-biology

crc_scrnaseq

Code for analysing single-cell data from colorectal cancer organoids

dach1_analysis_script

depth

depth2

differentiation