Comments (1)
Hi Christian, thanks for reaching out.
Unfortunately, CHAP can not identify multiple pathways simultaneously, which rules out your option number 3. The other two options should both work and it is up to your personal preference which one you chose. The -pf-init-probe-pos
exists for this purpose, but I have found it can sometimes be easier for scripting purposes to just position the ion channel in the box so that the center of the pore lies in the origin. How easy this would be in your case, you are in the best position to judge.
Hope this helps and best of luck with your research!
from chap.
Related Issues (20)
- Imported target "libgromacs" includes non-existent path HOT 1
- compiling the CHAP HOT 5
- error in pore path recognition. HOT 2
- The web link is not working HOT 1
- CMAKE ERROR when installing Chap (Version 0.9.1) on Ubuntu 20.04.2 LTS HOT 3
- Issue with "Make" command HOT 8
- Standard library logic error (bug): (exception type: St12out_of_range) vector::_M_range_check: __n (which is 2) >= this->size() (which is 2) HOT 12
- Pure bilayer system analysis
- "Number of frames read does not equal numberof frames analyised." HOT 1
- reading trajectory HOT 1
- Issues with python plotting graphs HOT 4
- how to set pf-init-probe-pos? HOT 1
- Plot against z-coordinates HOT 1
- pymol visualization issue HOT 1
- cmake error HOT 2
- Issue using the simg file HOT 4
- Errors related to make command, boost libraries and std cpp libraries while compiling CHAP HOT 2
- Regarding protein pore visualization HOT 1
- Error in protein pore profile calculation:
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from chap.