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10xr2c2

Scripts for analyzing 10x R2C2 data

accessing_public_genomic_data

Tutorials on accessing public reference and genomic data

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atacproc

ATAC-seq processing pipeline

atacseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

atacworks

Deep learning based processing of Atac-seq data

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioinf525

ATAC-seq lab for BIOINF525

book

Compiled and pretty version of labs

c3poa

Computational pipeline for calling consensi on R2C2 nanopore data

ccle_heterogeneity

cellatac

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

cellphonedb

clust

Automatic and optimised consensus clustering of one or more heterogeneous datasets

conics

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

csama

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

draw

elongationrate

Code used in the paper "Aging-associated changes in transcriptional elongation influence metazoan longevity".

fltseq_data

processed data and scripts for the FLT-seq manuscript

gelnet

Generalized Elastic Nets

hca_heart

This is the official repository for the Human Cell Atlas Heart project.

in-depth-ngs-data-analysis-course

infercnv

Inferring CNV from Single-Cell RNA-Seq

integrative-transcriptomics

Integrative transcriptomics reveals sexually dimorphic control of the cholinergic/neurokine interface in schizophrenia and bipolar disorder

leetcode-lucifer

LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解，记录自己的leetcode解题之路。)

liana

LIANA: a LIgand-receptor ANalysis frAmework

machine-learning-roadmap

mandalorion

Pipeline to identify isoforms from full-length cDNA sequencing data

mofa2

Multi-Omics Factor Analysis

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.