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2019_longitudinal_ssn

repo for scripts to calculate structural similarity network (ssn) for 2018 longitudinal data

anki_gre_vocab

creates an anki deck for GRE vocab prep

autocorrect-py

A simple supervised learning dictionary to correct texts implemented in Python 3

automagic

Automagic

autoreject

Automated rejection and repair of bad trials/sensors in M/EEG

beautiful-jekyll

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

bsds_slides_prototype

test BSDS slides

cpac

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

deepneuro

A deep learning python package for neuroimaging data. Made by:

dentistsmile

Single page Jekyll theme for dental clinics

dltk

Deep Learning Toolkit for Medical Image Analysis

docker-stacks

Ready-to-run Docker images containing Jupyter applications

docker-zim

zim on macOS

dockerfiles

compilation of dockerfiles

fmri_utils

short mri/fmri utilities

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

forward

Sherlock Port Forwarding Utility

gitbitbar

script written for bitbar app

lipsia

lipsia3.0

logseq-calendars-plugin

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

neurokit.py

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

neurowiki-gollum

gollum implementation of neurowiki

obsmd-life-manager

path_explain

A repository for explaining feature attributions and feature interactions in deep neural networks.

pyprep

A python implementation of the Preprocessing Pipeline (PREP) for EEG data

quiver2wiki

converts quiver library into locally hosted markdown-based wiki.

rpipe

Tool for reading from stdin and writing to rclone storage.

script_templates

templates for script development

scsnlscripts

all lab-wide scripts (i.e. preprocessmri) executable with mlsubmit. Includes utils.