Cassie Robertson's Projects
T1D ImmunoChip association analysis in African American subjects
Repo for the R package coloc
Learning to use github together!
Single cell RNA-seq quality control, transcription profile clustering & cell-type assignment
A modular, containerized pipeline for ATAC-seq data processing
Processing and analysis of publicly available molecular profiling data sets
Single Cell Analysis of Five'Ends
General pipeline for imputation using TOPMed Imputation Server or Michigan Imputation Server API. Assumes input genotypes are on hg19.
General pipeline for QC of a genotyping arrays. Note, the ancestry inference step merges with 1KG reference on rsids (not chr:pos), so is build-agnostic.
Automates setup of configs and execution of preprocessing steps for a multiome library.
robust GWAS using family data
Clustering scRNAseq by genotypes
Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes
Analysis scripts for 10X snATAC-seq and snRNA-seq multiome data generated for the T1D U01 collaborative project between Stephen Parker and Shuibing Chen labs