ccrobertson Goto Github PK

aa-immunochip

T1D ImmunoChip association analysis in African American subjects

atacseq-nextflow

coloc

Repo for the R package coloc

goblue

Learning to use github together!

nf_scrna_qc

Single cell RNA-seq quality control, transcription profile clustering & cell-type assignment

pepatac

A modular, containerized pipeline for ATAC-seq data processing

poems

publicdata

Processing and analysis of publicly available molecular profiling data sets

rnaseq-nextflow

scafe

Single Cell Analysis of Five'Ends

snakemake-genotype_imputation

General pipeline for imputation using TOPMed Imputation Server or Michigan Imputation Server API. Assumes input genotypes are on hg19.

snakemake-genotype_qc

General pipeline for QC of a genotyping arrays. Note, the ancestry inference step merges with 1KG reference on rsids (not chr:pos), so is build-agnostic.

snakemake-multiome_preprocessing

Automates setup of configs and execution of preprocessing steps for a multiome library.

snatacseq-nextflow

snipar

robust GWAS using family data

snrnaseq-nextflow

souporcell

Clustering scRNAseq by genotypes

t1d-immunochip-2020

Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes

t1d_u01

Analysis scripts for 10X snATAC-seq and snRNA-seq multiome data generated for the T1D U01 collaborative project between Stephen Parker and Shuibing Chen labs

utility_scripts