Comments (5)
all plots in lesson have been saved in a file
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Plots will change because of the changes that I am doing in the taxonomy episodes.
from metagenomics-analysis.
You will need to add these lines before and after the plot ..
pdf("plot_abundances.pdf",width = 15, height = 5)
ggplot (your plot ...)
dev.off()
from metagenomics-analysis.
Add ggsave line to all R images in Intro to R and phyloseq episodes
from metagenomics-analysis.
Since in the instance the plotting is going to work, I just added a note at instructor notes.. that sometimes images are not displayed in local installation, and then you need to save the images using:
pdf("plot_abundances.pdf",width = 15, height = 5)
ggplot (your plot ...)
dev.off()
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Related Issues (20)
- Variable names in Intro to R HOT 2
- Data processing and visualization too dense HOT 2
- Improve Assessing Read Quality episode HOT 1
- Improve Trimming and Filtering episode HOT 1
- Provide files created during the lesson HOT 2
- Exercises and discussions in Data processing lesson HOT 1
- Typos HOT 2
- Required software setup section HOT 4
- Add explanation about factors in Intro to R
- Adapter files HOT 1
- Database for taxonomic assignment
- Provide additional data and setup instructions for local users HOT 3
- Add "not spaces in file names" in the Data tidiness
- metadata
- RStudio not working in AWS HOT 1
- Quast HOT 1
- Review the Kraken command HOT 1
- Say something about the thrid sample
- The AMI is dirty HOT 4
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