campanam Goto Github PK
Name: Michael G. Campana
Type: User
Company: @Smithsonian
Bio: Center for Conservation Genomics Smithsonian Conservation Biology Institute
Blog: https://nationalzoo.si.edu/conservation/michael-g-campana
Michael G. Campana's Projects
admixture-stats
CorrSieve helper scripts for ADMIXTURE data
amakihi_go
Script to perform GO enrichment tests for avian malaria challenge experiments in 'amakihi
avipoxvirus
Pipeline to identify avipoxivirus sequences
bait-development
Scripts and tools for bait set development
baitstools
Software for hybridization capture bait design
congenlib
Ruby library for conservation genomics
elephants
Pipeline for Elephant Genotyping
faeces
Scripts to analyze noninvasive DNA from Mojave canid scats
genome_coverage
Script to calculate genome coverage from a BEDGRAPH (bga)
genome_decontaminate
Script to remove NCBI-identified contaminant sequences from a genome
kinshiputils
Kinship bootstrapping and triangular matrices
ratestools
Pipeline to calculate de novo mutation rates from parent-offspring trios
rcorrsieve
R implementation of CorrSieve
rubycorrsieve
Ruby implementation of CorrSieve
uce2speciestree
Pipeline script to generate input files for ASTRAL and SVDquartets from phyluce nexus alignments
ucealnstats
Calculate taxon-specific alignment statistics from a collection of UCE alignments
vcf2aln
Script to convert multi-sample VCFs to FASTA alignments
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