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angiotool

A trial to convert AngioTool ( https://ccrod.cancer.gov/confluence/display/ROB2/Home ) into a Fiji plugin

bioformats2raw

Bio-Formats whole slide imaging to raw format converter

crabz

Like pigz, but rust

deepimagej-plugin

The ImageJ plugin to run deep-learning models

example-imagej-command-kotlin

An ImageJ command that mixes Kotlin and Java code

gzp

Multi-threaded Compression

homebrew-cask

🍻 A CLI workflow for the administration of macOS applications distributed as binaries

imagej

Public domain software for processing and analyzing scientific images – a.k.a. ImageJ 1.x

imagej-common

ImageJ core data model

imagej-launcher

The ImageJ native launcher

imagej-legacy

Backwards compatibility with ImageJ 1.x

imagej.github.io

GitHub Pages for ImageJ

imagej2

:sparkler: Open scientific N-dimensional image processing :microscope:

isic-archive-downloader

A script to download the ISIC Archive of lesion images

license-maven-plugin

Maven plugin to download and collect license files from project dependencies.

lighting

Control LIFX lights from your Mac via a Notification Center Widget

list-of-update-sites

The update sites ImageJ knows about automatically

macmoji

Slack/GitHub/Trello emoji for your mac! 😁 💥 💻

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

medical-data

medical-imaging-datasets

A list of Medical imaging datasets.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

napari

napari: a fast, interactive, multi-dimensional image viewer for python

oct-converter

Extract the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

oct-to-tiff

A command line tool for converting optical coherence tomography angiography (OCTA) data.

osx-cpu-temp

Outputs current CPU temperature for OSX

qupath

QuPath - Open Source Digital Pathology

script-editor

Script Editor and Interpreter for SciJava script languages

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks