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awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

bbmap_docker

Docker build for bbmap

boleracea-associativetranscriptomics

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

degenprime

Primer design from single genes to whole gene families for unlocking the tree of life

elaspic2

Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.

heim

Cross-platform async library for system information fetching 🦀

homebrew-zenith

jupyter_metagenome_docker

Jupyter Docker for Replicon Metagenome Analysis - setup with phyloseq, metagenomeseq, deseq2, dada2, ggplot2, ggvegan, ggpubr

lefse

lg

linux-taskstats-rs

Rust interface for Linux taskstats

metapi

A general metagenomics data mining system focus on robust microbiome research

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

nanoplot

Plotting scripts for long read sequencing data

pyagh

A package for calculating kinship matrix

pybigwig

A python extension for quick access to bigWig and bigBed files

pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

react-alignment-viewer

📊 A React component to interactively view multiple sequence alignments (MSA).

react-msa-viewer

React rerelease of MSAViewer

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

sysinfo

A system handler to get information and interact with processes written in Rust

twas_sim

Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

zenith

Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage