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30-days-of-javascript

30 days of JavaScript programming challenge is a step-by-step guide to learn JavaScript programming language in 30 days. This challenge may take more than 100 days, please just follow your own pace.

algorithm

analysis-tutorials

bioinformatic analysis tutorials and pipelines

anchor

:anchor: Find bimodal, unimodal, and multimodal features in your data

atac-seq

Basic workflow for ATAC-seq analysis

atac-seq-pipeline

ENCODE ATAC-seq pipeline

auto_lymph

Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning

bonvoyage

:triangular_ruler: Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

circsplice

CircSplice

clam

CLIP-seq Analysis of Multi-mapped reads

clam_encode_snakemake

Snakemake pipeline for running CLAM on ENCODE eCLIP data

clam_m6a_snakemake

Snakemake pipeline of CLAM processing m6A RIP-seq (MeRIP)

dapars2

Dynamics analysis of Alternative PolyAdenylation from RNA-seq

dsc

Deep Splicing Code: Classifying Alternative Splicing Events Using Deep Learning

eclip

eklipse

a tool for predicting mitochondrial DNA deletions using soft-clipping

gentrl

Generative Tensorial Reinforcement Learning (GENTRL) model

giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.

hcc_prognostic

Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning

ifnar_epigenome

Processing and analysis scripts for Xu Qiu manuscript

irap

integrated RNA-seq Analysis Pipeline

maxentscan

MaxEntScan source code, copied from http://genes.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html

mexpress

MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.

mtoolbox

A bioinformatics pipeline to analyze mtDNA from NGS data

mtseeker

mitochondrial variant analysis tools

oncosplicing

openms

The codebase of the OpenMS project

orqas

ORF Quantification pipeline for Alternative Splicing

pasta