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apm_matlab

APMonitor Optimization Suite in MATLAB

bifurcationdiagram

Create a bifurcation diagram for a dynamic system.

cardioem-4ch

Whole-heart electromechanical simulations using Latent Neural Ordinary Differential Equations

chebfun

Chebfun: numerical computing with functions.

cnapy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

cnapy-projects

:world_map: A repository of CNApy projects

cocotools

Numerical Continuation in MATLAB

covid-19

COVID 19 Case Projection Model for Turkey

data_science_for_physicists

Data science for physicists

dde-biftool

DDE-BIFTOOL is a set of routines for performing numerical bifurcation analysis of delay-differential equations, running in MATLAB or GNU Octave

diffeqdocs.jl

Documentation for the DiffEq ecosystem

differentialequations.jl

Multi-language suite for high-performance solvers of differential equations

dynamic-sensitivity-analysis

A little script I have developed in MATLAB to perform dynamic sensitivity analysis on ODE models of biological systems. This sort of analysis can be useful to interpret changes in the system sensitivity to regulation and interventions at different simulated times. See link to a paper below that shows the insights that can be gained from performing this sort of analysis. See also the 'readme' file with useful/essential indications on how to use the script. Note that it involves creating a Simbiology model using the template provided within the script. A little example model is incorporated into the script where the user's model would be initially defined so that if you run the script as it is you should be able to see the kind of output it produces (for a small example model). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159174/

fem2dt

Evolutive Finite Elements for Diffusion Advection Reaction Problem

fractional_step

This folder contains matlab files for implementation of a Fractional Step Method for solutions of Advection-Diffusion-Reaction as described in Finite Difference Methods by Randall LeVeque

fvtool

Finite volume toolbox for Matlab/Octave

gridap.jl

Grid-based approximation of partial differential equations in Julia

hssmatrices.jl

A Julia package for hierarchically semi-separable (HSS) matrices.

intervalsjuliacon2020

jfemadr1d

Finite Element method for the 1D Advection-Diffusion-Reaction problem

jgu-letter

A LaTeX-letter class for writing letters in the corporate design of the Johannes Gutenberg-University of Mainz

julia

The Julia Programming Language

lyk-alistirma

maple-scientific-computing

Approximate solutions of ODEs,PDEs and nonlinear equations

modeling-and-beyond

A community effort to review the state of modeling methodology in biology

nmpde

Numerical Methods for Partial Differential Equations (MATH F422 - BITS Pilani)

num-methods-for-pdes

Lecture material on numerical methods for partial differential equations.

pydstool.jl

A wrapper for the PyDSTool library

siconos

Simulation framework for nonsmooth dynamical systems