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anatomybrowser

cliniciancoders

cnn-regression-abcd

coregistration-njtv

Groupwise, between modality coregistration using a normalised joint total variation (NJTV) cost function.

cornucopia

An abundance of augmentation layers

cppmix

cppprojects

decoded

deep-learning-testbed

Code for doing deep learning, mostly on medical images (in python)

findcmakes

holohub

Central repository for applications and operators for Holoscan

holoscan-docs

Documentation for the Holoscan Platform

julialab

knngraphfilter

A VTK filter that creates a K-Nearest Neighbor graph on a point set.

logistic-pca-tipping

Python implementation of logistic PCA (M. Tipping, NeurIPS 1999).

lumpnav

Slicer extension for ultrasound-guided breast tumor resection (lumpectomy)

mhd-to-nifti

Some code to convert .mhd files to .nii (NIfTI) files. Uses example data from the RIRE dataset.

monai

AI Toolkit for Healthcare Imaging

monai-tutorials

MONAI Tutorials

neural-enhance

Super Resolution for images using deep learning.

nndetection

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

nptrackingtools

Link to Optitrack API from Tracking Tools. Cmake project to include in other tools

optitracknavigation

Slicer module for navigation using OptiTrack optical tracking sytem.

pointsetprocessing

A set of classes (vtkPointSetOutlierRemoval, vtkPointSetNormalEstimation, vtkPointSetNormalOrientation, vtkPointSetCurvatureEstimation, vtkEuclideanMinimumSpanningTree, and vtkRiemannianGraphFilter) to enable several basic operations on point sets. These classes are implemented as VTK filters.

poissonreconstruction

Poisson surface reconstruction implementation in VTK

predictpronto

Predict using the PRoNTo toolbox. Supports both regression and classification, and different predictive models.

projectweek

Website for NA-MIC Project Weeks

pythonlibs

slicer

Multi-platform, free open source software for visualization and image computing.

slicerboneenhancer