Error in visualizing trajectory about wot

[nekonekko]

I am getting the same error.

I am using the tutorial data and Notebook 4 as it is distributed.

The environment is as follows:

Apple M2 Chip
macOS Sonoma ver 14.4.1
Python 3.11.6

anndata            0.10.6
appnope            0.1.4
array_api_compat   1.5.1
asttokens          2.4.1
comm               0.2.2
contourpy          1.2.0
cycler             0.12.1
Cython             3.0.9
debugpy            1.8.1
decorator          5.1.1
executing          2.0.1
fonttools          4.50.0
h5py               3.10.0
ipykernel          6.29.4
ipython            8.22.2
ipywidgets         8.1.2
jedi               0.19.1
joblib             1.3.2
jupyter_client     8.6.1
jupyter_core       5.7.2
jupyterlab_widgets 3.0.10
kiwisolver         1.4.5
matplotlib         3.8.3
matplotlib-inline  0.1.6
natsort            8.4.0
nest-asyncio       1.6.0
numpy              1.26.4
packaging          24.0
pandas             2.2.1
parso              0.8.3
patsy              0.5.6
pexpect            4.9.0
pillow             10.2.0
pip                24.0
platformdirs       4.2.0
POT                0.9.3
prompt-toolkit     3.0.43
psutil             5.9.8
ptyprocess         0.7.0
pure-eval          0.2.2
Pygments           2.17.2
pyparsing          3.1.2
python-dateutil    2.9.0.post0
pytz               2024.1
pyzmq              25.1.2
scikit-learn       1.4.1.post1
scipy              1.12.0
setuptools         65.5.0
six                1.16.0
stack-data         0.6.3
statsmodels        0.14.1
threadpoolctl      3.4.0
tornado            6.4
traitlets          5.14.2
tzdata             2024.1
wcwidth            0.2.13
widgetsnbextension 4.0.10
wot                1.0.8.post2

[nekonekko]

I made the following changes based on the error message and it worked, but the output does not seem to be correct.
The color of the plot is almost uniform.
There may be a problem with the color bar settings.

binned_df['values'] = trajectory_ds[:, name].X
↓
binned_df['values'] = trajectory_ds[:, name].X.T[0]

[nekonekko]

It now works correctly by rewriting it as follows!

binned_df['values'] = trajectory_ds[:, name].X
↓
binned_df['values'] = trajectory_ds[:, name].X.T[0].tolist()

Since trajectory_ds[:, name].X is a two-dimensional array of the form (165892, 1), it should first be converted into a one-dimensional array using .T[0].

However, because trajectory_ds[:, name].X.T[0] is an ArrayView class, it also needs to be converted into a form that can be assigned to a DataFrame using .tolist().