Comments (2)
akiezun
commented on July 2, 2024
the requirement is to port the tool and the integration tests. Removing 'help wanted' because it requires broad-only data. The data must be checked to make sure it's publicly avaialbable.
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droazen
commented on July 2, 2024
Adding to annotation epic #3274
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Related Issues (20)
- Adding VCF index argument to SelectVariants HOT 3
- GenotypeGVCFs seems to ignore `--genotype-assignment-method `
- gatk GenotypeGVCFs error：A USER ERROR has occurred: Bad input: Presence of '-RAW_MQ' annotation is detected. HOT 6
- Unable to run the spark code in Scala Ide getting error as below HOT 1
- GenomicsDBImport Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
- MARK DUPLICATE PROCESS ERROR HOT 1
- ValidateVariants memory usage is high when using a gvcf as the interval list HOT 1
- Figure out azure authentication in tests
- New conda solver breaking gatkcondaenv create HOT 1
- GermlineCNVCaller different results with same GATK and different Ubuntu HOT 2
- Triploid genotype HOT 1
- GermlineCNVCaller different results in GATK 4.5.0.0 HOT 9
- UpdateVCFSequenceDictionary replaces "##FORMAT=<ID=GQ" with stock text HOT 5
- Variant Calling at Interval Boundaries in HaplotypeCaller HOT 1
- Azure URIs and GenomicsDB HOT 1
- How to set the missing rate during filtering---gatk VariantFiltration
- Can funcotator remove mutation data from dbsnp
- GenotypeGVCFs Poor Performace on Whole Genome Sequencing HOT 5
- Update hmmUrl in install_R_packages.R
- HaplotypeCaller phased missing genotype to .|.
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