Comments (6)
Retracted!
from gatk.
(this is part of VQSR)
from gatk.
this is not on the critical path now. will keep working on it but removing the milestone
from gatk.
alpha-2
from gatk.
Most straightforward port possible. Should probably rename this tool to ApplyVQSR
for consistency with ApplyBQSR
from gatk.
Closed via #2094.
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Related Issues (20)
- GenomicsDBImport Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
- MARK DUPLICATE PROCESS ERROR HOT 1
- ValidateVariants memory usage is high when using a gvcf as the interval list HOT 1
- Figure out azure authentication in tests
- New conda solver breaking gatkcondaenv create HOT 1
- GermlineCNVCaller different results with same GATK and different Ubuntu HOT 2
- Triploid genotype HOT 1
- GermlineCNVCaller different results in GATK 4.5.0.0 HOT 9
- UpdateVCFSequenceDictionary replaces "##FORMAT=<ID=GQ" with stock text HOT 5
- Variant Calling at Interval Boundaries in HaplotypeCaller HOT 1
- Azure URIs and GenomicsDB HOT 1
- How to set the missing rate during filtering---gatk VariantFiltration
- Can funcotator remove mutation data from dbsnp
- GenotypeGVCFs Poor Performace on Whole Genome Sequencing HOT 5
- Update hmmUrl in install_R_packages.R
- HaplotypeCaller phased missing genotype to .|.
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- GetPileupSummaries Permanently Stalled but High CPU Usage HOT 5
- VariantRecalibrator R-script fails if `scales` v1.3.0 is installed HOT 11
- FileDataSource is in SAMRecord HOT 1
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