Name: Brinkman Lab - Simon Fraser University
Type: Organization
Bio: Bioinformatics and genomics research lab, aiming to better control infectious diseases in a sustainable way.
Location: Burnaby (Greater Vancouver), British Columbia, Canada
Blog: https://www.brinkmanlab.ca/
Brinkman Lab - Simon Fraser University's Projects
Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
A Python library for interacting with CloudMan and Galaxy API
Conda recipes for the bioconda channel.
Official git repository for Biopython (originally converted from CVS)
Tool to interconvert between various bioinformatics formats that BioPython supports
Galaxy API client library for Golang
Galaxy wrapper for the chewBBACA BSR-Based Allele Calling Algorithm
Kubernetes deployment recipies for various third party cloud providers
Run a Cloudflare Worker Locally
Repo for conda Colombo install
Curated database of labelled Genomic Islands found in publications
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
Merge features in GFF files
A Nextflow pipeline assembler for genomics :whale::package:
Data intensive science for everyone.
Galaxy web api client library
Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.
Central repo for all brinkman maintained Galaxy Tools
SVG based genome viewer written in javascript using D3
GFF and GTF file manipulation and interconversion
Scripts to evaluate software for GI prediction
Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
Deploy IRIDA locally using docker or to a major Cloud provider
IRIDA Plugin for AMR Detection
IslandViewer genomic island prediction pipeline implemented as a plugin for IRIDA
Pipeline for detecting and annotating genomic islands and relationships between the respective genomes