briney Goto Github PK

10xnbds

abanalysis

abcloud

Launch and manage cloud computing resources for antibody repertoire analysis

abtools

Analysis of antibody NGS data

abx_tutorial_2019

airr-training

antiberta

Public repository describing training and testing of AntiBERTa.

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

basespace-python-sdk

BaseSpace Python SDK

brineylab-workspace

🛠 All-in-one web-based IDE specialized for machine learning and data science.

choose-your-own-adventure-presentations

"Choose Your Own Adventure" live voting presentations with Reveal.js, Flask, WebSockets and SMS.

clonify

clonify-python

clonify-scirep2016data

Sequence data for the Clonify publication (Briney et al., 2016)

cocalc-docker

Docker setup for running CoCalc as downloadable software on your own computer

conda

Specifying a conda environment with `environment.yml`

cvisb_workshop_2020

deepab

Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.

dit

Python package for information theory.

django-pdf

Manage uploaded documents (pdfs) with backend cloud processing of the pdfs into individual pngs per page

dkube-helm

Repository to host dkube helm charts

docker-images

docker-images-1

Repository of Docker images created by Continuum Analytics

env-analysis

Determines the presence or absence of specific Env glycosylation sites

gridmap

Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).

identity-divergence

imnet

imNet: a Sequence Network Construction Toolkit

locuspocus

mabtools

ml-road

Machine Learning Resources, Practice and Research