Related Issues (20)
- Output of bwa-meth in BAM format HOT 1
- The link in `README.md` of the `compare/` folder is not working HOT 4
- [Release Request] make a release since bwa-mem2 index are not included in current version HOT 1
- bwa-meth index error HOT 12
- bwa-mem2 cannot recognize the input from the pipe HOT 5
- broken pipeline HOT 3
- `handle_header` mangles alt contigs HOT 2
- Unique mapped reads HOT 1
- Q: Issues with installation 0.2.5 HOT 1
- Timestamp checking of .fa files prevents me from running bwa-meth in the cloud HOT 2
- Meet Error When running bwa meth mem2
- Help command for aligner command does not work HOT 1
- unrecognized reference name during sam_parse HOT 9
- repeated alignment (bwa get stuck) HOT 2
- when running bwameth example, exception: AttributeError: module 'toolshed.files' has no attribute 'prefunc' HOT 2
- Exception("bad or empty fastqs") HOT 2
- Overriding hardcoded -B values is possible from command line HOT 3
- YC and MD tag issue HOT 3
- YC and YD tags HOT 1
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