bredelings Goto Github PK

argweaver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

bali-phy

Bayesian co-estimation of phylogenies and multiple alignments via MCMC

bali-phy-packages

BAli-Phy Package List

bayescode

bayesianestimatorselfing

A Bayesian method for estimating self-fertilization rates and other mating system parameters

beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

bioconda-recipes

Conda recipes for the bioconda channel.

bpp

Bayesian analysis of genomic sequence data under the multispecies coalescent model

compatibility-testing

This project contains codes for solving Compatibility Testing problem.

copenhagen

Analysis of genotyping and next-generation sequencing data in medical and population genetics

deploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

drawtree

A project to visualize phylogenetic trees and related objects.

ghc

Mirror of the Glasgow Haskell Compiler. Please submit issues and patches to GHC's Gitlab instance (https://gitlab.haskell.org/ghc/ghc). First time contributors are encouraged to get started with the newcomers info (https://gitlab.haskell.org/ghc/ghc/wikis/contributing).

githackday

haskell-bio

Learning haskell by trying to write some sequence and phylogenetics routines

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

homebrew-bioinformatics

Bioinformatics software -- including BAli-Phy

iq-tree

Efficient phylogenomic software by maximum likelihood

ldhat

Estimate recombination rates from population genetic data

learn-you-a-haskell

“Learn You a Haskell for Great Good!” by Miran Lipovača

macports-ports

The MacPorts ports tree

mcon

meson

The Meson Build System

mummer

Mummer alignment tool

ncl

Nexus Class Library

octopus

Bayesian haplotype-based mutation calling

otcetera

C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

phylosetup

Simple GUI to create phylogenetic analysis scripts

phylter

Automatically exported from code.google.com/p/phylter

polyibd

Infer blocks of identity by descent using unphased haplotype data