boazmohar Goto Github PK

animateimages

Helper functions to make animations of images with corresponding traces and labels using matplotlib

arduino

A repo for ardino based projects for both code and board design

bigstream

Tools for distributed alignment of massive images

binder-deployment

Deployment scripts for binder service

bolt

Unified interface for local and distributed ndarrays

bpod

Open source rodent behavior measurement and control

bpod_gen2

Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)

cellpose

a generalist algorithm for cellular segmentation

circuitseeker

Tools to help find neural circuits

dask

Parallel computing with task scheduling

dj-spineimaging

ilastik

ilastik-shell, applets, and workflows to string them together.

kedro

A Python framework for creating reproducible, maintainable and modular data science code.

map-ephys

Mesoscale activity ephys ingest schema

map-lab

Svoboda lab schema

matplotlib

matplotlib: plotting with Python

neurom

Neuronal Morphology Analysis Tool

pi2

C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.

psychopy

For running psychology and neuroscience experiments

py2016_git

pybdv

python tools for BigDataViewer

pysparkutils

A collection of utilities for handling pySpark's SparkContext

pythonsparkutils

scikit-image

Image processing in Python

scipy

SciPy library main repository

spark

Mirror of Apache Spark

spark-janelia

Scripts for using Spark on Janelia's HPC

spark-social-science

Automated Spark Cluster Builds with RStudio or PySpark for Policy Research

spark-timeseries

A library for time series analysis on Apache Spark

spineimageing