Comments (2)
gwbischof
commented on August 31, 2024
Sometimes almost of the tests fail with this error. Sometimes deactivating and reactivating my conda environment fixes it. My current environment:
# packages in environment at /home/gbischof/anaconda3/envs/garrett2:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
affine 2.2.2 pypi_0 pypi
alabaster 0.7.12 pypi_0 pypi
appdirs 1.4.3 pypi_0 pypi
asciitree 0.3.3 pypi_0 pypi
astroid 2.2.5 pypi_0 pypi
astropy 3.2.1 pypi_0 pypi
atomicwrites 1.3.0 pypi_0 pypi
attrs 19.1.0 pypi_0 pypi
babel 2.7.0 pypi_0 pypi
backcall 0.1.0 pypi_0 pypi
beautifulsoup4 4.8.0 pypi_0 pypi
bleach 3.1.0 pypi_0 pypi
bluesky 1.4.1 pypi_0 pypi
bokeh 1.3.0 pypi_0 pypi
boltons 19.1.0 pypi_0 pypi
boto3 1.9.195 pypi_0 pypi
botocore 1.12.195 pypi_0 pypi
bottleneck 1.2.1 pypi_0 pypi
ca-certificates 2019.5.15 0
certifi 2019.6.16 py37_0
cftime 1.0.3.4 pypi_0 pypi
chardet 3.0.4 pypi_0 pypi
click 7.0 pypi_0 pypi
click-plugins 1.1.1 pypi_0 pypi
cligj 0.5.0 pypi_0 pypi
cloudpickle 1.2.1 pypi_0 pypi
codecov 2.0.15 pypi_0 pypi
coverage 4.5.3 pypi_0 pypi
cycler 0.10.0 pypi_0 pypi
dask 2.0.0 pypi_0 pypi
databroker 0.9.3.post372+g52b1192e dev_0 <develop>
decorator 4.4.0 pypi_0 pypi
defusedxml 0.6.0 pypi_0 pypi
dill 0.3.0 pypi_0 pypi
docopt 0.6.2 pypi_0 pypi
doct 1.0.5 pypi_0 pypi
docutils 0.14 pypi_0 pypi
entrypoints 0.3 pypi_0 pypi
event-model 1.11.0 pypi_0 pypi
fast-histogram 0.7 pypi_0 pypi
fasteners 0.15 pypi_0 pypi
fastparquet 0.3.1 pypi_0 pypi
flake8 3.7.7 pypi_0 pypi
fsspec 0.3.6 pypi_0 pypi
glue-core 0.15.5 pypi_0 pypi
glue-vispy-viewers 0.12.2 pypi_0 pypi
glueviz 0.15.2 pypi_0 pypi
h5py 2.9.0 pypi_0 pypi
historydict 1.2.3 pypi_0 pypi
holoviews 1.12.3 pypi_0 pypi
html5lib 1.0.1 pypi_0 pypi
humanize 0.5.1 pypi_0 pypi
hvplot 0.4.0 pypi_0 pypi
idna 2.8 pypi_0 pypi
imageio 2.5.0 pypi_0 pypi
imagesize 1.1.0 pypi_0 pypi
importlib-metadata 0.18 pypi_0 pypi
intake 0.5.3 pypi_0 pypi
intake-bluesky 0.1.0a8.post108+g451a508 dev_0 <develop>
intake-mockup 0.0.0 dev_0 <develop>
intake-parquet 0.2.1 pypi_0 pypi
intake-xarray 0.3.1+8.gcbea75c.dirty dev_0 <develop>
ipykernel 5.1.1 pypi_0 pypi
ipython 7.6.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
isort 4.3.21 pypi_0 pypi
jedi 0.14.0 pypi_0 pypi
jinja2 2.10.1 pypi_0 pypi
jmespath 0.9.4 pypi_0 pypi
jsonschema 3.0.1 pypi_0 pypi
jupyter-client 5.3.1 pypi_0 pypi
jupyter-core 4.5.0 pypi_0 pypi
kiwisolver 1.1.0 pypi_0 pypi
lazy-object-proxy 1.4.1 pypi_0 pypi
libedit 3.1.20181209 hc058e9b_0
libffi 3.2.1 hd88cf55_4
libgcc-ng 9.1.0 hdf63c60_0
libstdcxx-ng 9.1.0 hdf63c60_0
llvmlite 0.29.0 pypi_0 pypi
locket 0.2.0 pypi_0 pypi
markdown 3.1.1 pypi_0 pypi
markupsafe 1.1.1 pypi_0 pypi
matplotlib 3.1.1 pypi_0 pypi
mccabe 0.6.1 pypi_0 pypi
mf2py 1.1.2 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
mongobox 0.1.8 pypi_0 pypi
mongoquery 1.3.5 pypi_0 pypi
monotonic 1.5 pypi_0 pypi
more-itertools 7.1.0 pypi_0 pypi
mpl-scatter-density 0.6 pypi_0 pypi
msgpack 0.6.1 pypi_0 pypi
msgpack-numpy 0.4.4.3 pypi_0 pypi
multidict 4.5.2 pypi_0 pypi
nbconvert 5.5.0 pypi_0 pypi
nbformat 4.4.0 pypi_0 pypi
ncurses 6.1 he6710b0_1
netcdf4 1.5.1.2 pypi_0 pypi
networkx 2.3 pypi_0 pypi
notebook 6.0.0 pypi_0 pypi
numba 0.45.0 pypi_0 pypi
numcodecs 0.6.3 pypi_0 pypi
numpy 1.16.4 pypi_0 pypi
numpydoc 0.9.1 pypi_0 pypi
openssl 1.1.1c h7b6447c_1
ophyd 1.3.3 pypi_0 pypi
packaging 19.0 pypi_0 pypi
pandas 0.24.2 pypi_0 pypi
pandocfilters 1.4.2 pypi_0 pypi
panel 0.5.1 pypi_0 pypi
param 1.9.1 pypi_0 pypi
parso 0.5.0 pypi_0 pypi
partd 1.0.0 pypi_0 pypi
pathlib 1.0.1 pypi_0 pypi
pexpect 4.7.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 6.1.0 pypi_0 pypi
pims 0.4.1 pypi_0 pypi
pip 19.1.1 py37_0
pluggy 0.12.0 pypi_0 pypi
prettytable 0.7.2 pypi_0 pypi
prometheus-client 0.7.1 pypi_0 pypi
prompt-toolkit 2.0.9 pypi_0 pypi
ptyprocess 0.6.0 pypi_0 pypi
py 1.8.0 pypi_0 pypi
pyarrow 0.14.1 pypi_0 pypi
pycodestyle 2.5.0 pypi_0 pypi
pyct 0.4.6 pypi_0 pypi
pydap 3.2.2 pypi_0 pypi
pyepics 3.4.0 pypi_0 pypi
pyflakes 2.1.1 pypi_0 pypi
pygments 2.4.2 pypi_0 pypi
pygraphviz 1.5 pypi_0 pypi
pylint 2.3.1 pypi_0 pypi
pymongo 3.8.0 pypi_0 pypi
pyopengl 3.1.0 pypi_0 pypi
pyparsing 2.4.0 pypi_0 pypi
pyqt5 5.13.0 pypi_0 pypi
pyqt5-sip 4.19.18 pypi_0 pypi
pyrsistent 0.15.2 pypi_0 pypi
pytest 5.0.1 pypi_0 pypi
python 3.7.3 h0371630_0
python-dateutil 2.8.0 pypi_0 pypi
python-snappy 0.5.4 pypi_0 pypi
pytz 2019.1 pypi_0 pypi
pyviz-comms 0.7.2 pypi_0 pypi
pywavelets 1.0.3 pypi_0 pypi
pyyaml 5.1.1 pypi_0 pypi
pyzmq 18.0.2 pypi_0 pypi
qtconsole 4.5.2 pypi_0 pypi
qtpy 1.9.0 pypi_0 pypi
rasterio 1.0.24 pypi_0 pypi
readline 7.0 h7b6447c_5
requests 2.22.0 pypi_0 pypi
s3fs 0.3.1 pypi_0 pypi
s3transfer 0.2.1 pypi_0 pypi
scikit-image 0.15.0 pypi_0 pypi
scipy 1.3.0 pypi_0 pypi
send2trash 1.5.0 pypi_0 pypi
setuptools 41.0.1 py37_0
six 1.12.0 pypi_0 pypi
slicerator 1.0.0 pypi_0 pypi
snowballstemmer 1.9.0 pypi_0 pypi
snuggs 1.4.6 pypi_0 pypi
soupsieve 1.9.2 pypi_0 pypi
sphinx 2.1.2 pypi_0 pypi
sphinx-copybutton 0.2.5 pypi_0 pypi
sphinx-rtd-theme 0.4.3 pypi_0 pypi
sphinxcontrib-applehelp 1.0.1 pypi_0 pypi
sphinxcontrib-devhelp 1.0.1 pypi_0 pypi
sphinxcontrib-htmlhelp 1.0.2 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.2 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.3 pypi_0 pypi
sqlite 3.28.0 h7b6447c_0
suitcase-jsonl 0.2.0.post2+g2da8318 dev_0 <develop>
suitcase-mongo 0.1.0 pypi_0 pypi
suitcase-msgpack 0.2.2 pypi_0 pypi
suitcase-utils 0.4.1 pypi_0 pypi
super-state-machine 2.0.2 pypi_0 pypi
terminado 0.8.2 pypi_0 pypi
testpath 0.3.1 pypi_0 pypi
thrift 0.11.0 pypi_0 pypi
tifffile 2019.7.26 pypi_0 pypi
tk 8.6.8 hbc83047_0
toolz 0.9.0 pypi_0 pypi
tornado 6.0.3 pypi_0 pypi
tqdm 4.32.2 pypi_0 pypi
traitlets 4.3.2 pypi_0 pypi
typed-ast 1.4.0 pypi_0 pypi
tzlocal 2.0.0 pypi_0 pypi
urllib3 1.25.3 pypi_0 pypi
vcrpy 2.1.0 pypi_0 pypi
wcwidth 0.1.7 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
webob 1.8.5 pypi_0 pypi
wheel 0.33.4 py37_0
wrapt 1.11.2 pypi_0 pypi
xarray 0.12.2 pypi_0 pypi
xlrd 1.2.0 pypi_0 pypi
xz 5.2.4 h14c3975_4
yarl 1.3.0 pypi_0 pypi
zarr 2.3.2 pypi_0 pypi
zipp 0.5.1 pypi_0 pypi
zlib 1.2.11 h7b6447c_3
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danielballan
commented on August 31, 2024
I have seen this locally as well, but some reason not on CI. It is related to the archiver test. I think that will need an overhaul, so let's call this a "won't-fix".
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Related Issues (9)
- Reduce effort needed to produce intake-bluesky catalog. HOT 1
- Access modes HOT 7
- problem converting run to xarray HOT 2
- list index out of range HOT 2
- Dictionary changed size during iteration / catalog._run_starts
- Resolve issue with intake 0.5.0+ HOT 4
- Make tests run faster by doing intake_server fixture per module not per function HOT 1
- Give RemoteRunCatalog a nice __repr__ like RunCatalog HOT 1
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