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alphafold

alphafoldv2.1.0

alphafoldv2.2.0

Open source code for AlphaFold.

alphafoldv2.3.0

dgram2dmap

Converts AlphaFold distograms into distance matrices and saves them into a number of formats

dockq

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

edtsurf

Added functionality to EDTsurf

exjobb

ml_from_kaggle

ml_medbioinfo

Machine Learning in Medical Bioinformatics

ml_workshop

Workshop in Machine Learning for the The Swedish National Graduate School in Medical Bioinformatics

pcons

Protein Structure Consensus

pdb_codes

ph

proq2-server

ProQ2 web server

proq_scripts

proqdock

ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support Vector Regression algorithm. The current version has 13 features: both all-atom and interface features. ProQDock should also serve to develop hybrid methods in future attempts to solve this 'hard' problem.

proteus

Proteus is a Random Forrest based classifier to predict the 'disorder-to-order' transitioning binding residues (called 'protean') given the protein sequence

scripts

various scripts that might be useful

slurm_scripts

A bunch of useful tools to interact with slurm

tftb46

tmp

tmp2

wiki

wordom