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api-design

LivingSocial API Design Guide

biodata_check

biodata_check() is a function that checks user taxonomy against the BioData Taxonomic System

bishopia.github.io

bishopiaold.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

classify_raw_ccs

walkthrough multiple options for classifying pacbio ccs reads

cp_genome_assembly_and_variant_calling

cp_genome_phylogeny

ctd_bottle_clustering_by_depth

kmeans clustering to produce clustering variable for ctd bottle file output

dada2_install

database_retrieval

snippets of code to download databases

eukmetasanity_install_and_run

bespoke instructions for CCV setup and install of EukMetaSanity pipeline

longrepmarker

LongRepMarker: A high-precision algorithm for marking long repeat regions in genomes

mu_maker

converts tecan plate reader output from raw excel time series to treatment specific mus

my_blobtoolkit

install and usage of btk on ccv

my_braker2

my braker2 installation and pipeline

my_busco

instructions for installing and running busco via singularity container

my_reasonate

my installation and implementation of reasonaTE

ocg-561-2018_final-project

pull_values_from_soccom_nc

take SOCCOM nc and list of lat long, get time- and depth-averaged values for each site

rces_tutorial

working through tutorial by Abernathy at rabernat.github.io

rebcod_python_tutorial

home base for python bioinformatics tutorials from rebelCoder

rosalind_problems

home base for solving rosalind problems using python

singularity_scripts

website

Website template using Academic and Hugo