Comments (6)
Yes, we can, but I don't have enough rights to make it a private repo.
from biosimulators_test_suite.
I think this should be public. The test suite will be an important resource for validating simulator images. We will want developers of simulator containers to use this test suite. In fact, we will want developers to contribute to this -- particularly archives that include models encoded in other languages such as CellML for which we don't yet have examples. For users, the test suite will serve as documentation of how we validated simulator images. For the community, this will also serve as a collection of example archives, which is somewhat lacking.
from biosimulators_test_suite.
Makes sense. I was not sure what the intentions were with it. Using it as a common place to store examples is a great idea.
from biosimulators_test_suite.
Akhil's intention might have been different. But I think its important for the test suite to be public.
from biosimulators_test_suite.
from biosimulators_test_suite.
This is what I started in BioSimulations-utils
, along with code to use containers to execute the archives.
This repository now has the archives. The code to execute the archives is still in BioSimulations-utils
.
from biosimulators_test_suite.
Related Issues (20)
- Add test case for aggregate mathematical functions (e.g., min, max, sum)
- Add test case for random number generator functions (e.g., uniform, normal, poisson)
- Add test for resolution of model sources at absolute paths
- Add metadata about examples following OMEX Metadata guidelines HOT 3
- Add test case to check that data generators for plots are encoded into HDF5 consistently with the BioSimulators guidelines HOT 1
- Unpack example COMBINE/OMEX arhives HOT 1
- Move results and vega figures into folders? HOT 2
- Add option to execute test cases involving similar algorithms
- Wrong warning when running the test suite. HOT 1
- Wrong warning when running the test suite. HOT 1
- Add more direct tests for model changes
- Add test case for simulation re-start-ability
- Enable test suite to be run with Singularity rather than Docker images
- [Bug]: Log validation did not catch recent errors with vcell image HOT 3
- Update dev deployment of biosimulators along with prod when processing simulator submissions HOT 2
- Attributes not implemented on windows
- invalid test suite published model template
- Biosimulators_test_suite suffers from effect of biosimulators/Biosimulators_utils#115
- build large singularity images fails with default settings
- Can't update release number for wheel
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