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atacseq_pipeline

bioner-progress

This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).

circrnafinder

a tool for identifying circular RNAs using RNA-Seq data

civicmine

Text mining cancer biomarkers for the CIVIC database

cnci

Coding-Non-Coding Index (CNCI)

common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

containers

Docker and Singularity containers for Bioinformatics programs

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

diamond

Accelerated BLAST compatible local sequence aligner.

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

escher

Build, share, and embed visualizations of metabolic pathways.

genepattern-server

The GenePattern Server web application

google-research

Google AI Research

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwas

Scripts for GWAS association and metaanalysis

gwaspipeline

A basic GWAS analyses workflow. Worked examples provided in rendered markdown.

hugeseq

For original Nature Biotechnology Publication (Q1 2012)

humandiseaseontology

Repository for the Human Disease Ontology.

iswathx

iSwathX Package and Web Application

libsvm

lncrna-screen

lncRNA-screen

metaboanalystr

R package for MetaboAnalyst

metdna

All the source code of MetDNA.

microrna-sequencing

Creation of a repository for microRNA-sequencing pipeline

mint

A pipeline for the integration of DNA methylation and hydroxymethylation data

mirna-analysis

Skeleton for a micro RNA analysis from RNA-seq data

mps_breast

You can easily calculate mPS and predict prognosis here:

nbtpublic

The Neurophysiological Biomarker Toolbox -

nglview

Jupyter widget to interactively view molecular structures and trajectories

nlp-competitions-list-review

复盘所有NLP比赛的TOP方案，只关注NLP比赛，持续更新中！