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2021_siop_machine_learning_winners

Data and Code for the 2020-2021 SIOP Machine Learning Competition

amazon-omics-end-to-end-genomics

2023-02-06

amazon-omics-tutorials

architecture

aws-codebuild-docker-images

Official AWS CodeBuild repository for managed Docker images http://docs.aws.amazon.com/codebuild/latest/userguide/build-env-ref.html

aws-real-time-use-cases

Repo of quick starts for real time AWS use cases 🎓

circacompare

comparerhythms

Approaches to identify Differential Rhythmicity

deploy-docker-container-on-aws

Learn how to Deploy Docker Container on AWS

febsj-vda-overestimates

Reproducible code for manuscript "Venn diagram analysis overestimates the extent of circadian rhythm reprogramming" published in FEBS Journal

genomics-data-transfer-2023-08-18-and-storage

fork of original by by Sam Castro and Ryan Ulaszek

learn-wdl

Educational materials for learning WDL

limorhyde

mashr

An R package for multivariate adaptive shrinkage.

metaboanalystr

R package for MetaboAnalyst

metabodiff

pd_meta_analysis

These scripts are inteded to be an extension of the method section in the paper "Meta-analysis of the Parkinson’s disease gut microbiome suggests alterations linked to intestinal inflammation"

r-chatbot

r-lambda-workflow

Runtime for running R on AWS Lambda.

radarplot

Polar radar plots with R

rstudio-on-sagemaker-workshop

software_docker

Dockerfiles used to create the docker images containing most of the software we use.

timecycle-data

This Git Repo contains the raw data, analysis scripts, and results from the article "TimeCycle: Topology Inspired MEthod for theDetection of Cycling Transcripts in Circadian Time-Series Data". See the TimeCycle website for package details and usage.

timesignatr

TimeSignature R package

wdl

Workflow Description Language - Specification and Implementations

workflow-template-nextflow

Template for building a small workflow in Nextflow