biomathematica Goto Github PK

16s-pipeline

usearch based 16S community profiling pipeline for analysis of ribosomal amplicon sequencing & analysis

animalcules

R shiny app for total RNA-seq microbiome + transcriptome analysis

anvio

An analysis and visualization platform for 'omics data

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

aws-serverless-appsync-app

This workshop shows you how to build a Web Application that demonstrates how easy it is to create data driven web applications all with no servers. You will build a serverless web application that lets users search for popular tourist destinations. The application will use AWS AppSync and the AWS Serverless platform to provide real-time weather analysis of the indexed destinations.

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

carveme

CarveMe: genome-scale metabolic model reconstruction

clintrials

Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov

coda-ml

CODA-ML: Context-Specific Biological Knowledge Representation for Systemic Physiology Analysis

compass

A tool to predict sub-networks from metabolic networks

curatedmetagenomicdata

Curated and processed metagenomic data through ExperimentHub

decaf-metabolica

DD-DeCaF platform

diseases

Processing the DISEASES database

drugbank

User-friendly extensions of the DrugBank database

dtinet

A Network Integration Approach for Drug-Target Interaction Prediction

embl_gems

EMBL GEMs: A collection of GEnome-scale Models for bacterial species

escher

Build, view, share, and embed pathway maps.

fastsl

A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

fiabftw

Firecloud in a Box for the World

firecloud-ui

FireCloud user interface for web browsers.

fur-jekyll-template

:feet: E-Commerce template for Jekyll

galaxy

Data intensive science for everyone.

gecko

Toolbox for including enzyme constraints on a genome-scale model.

hetionet

Hetionet: an integrative network of disease

hideep

Network-based discovery of hormones affecting drug efficacy

htmlwidgets

HTML Widgets for R

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

jukebox

learn

Machine learning and feature extraction for the Rephetio project