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Comments (4)

phupe avatar phupe commented on June 2, 2024

the script grid_explorer.sh provides very interesting information. As the hardware memory for each node is not dispalyed, I suggest to add the information retrived by:

sinfo -o "%20N %10c %m %25f %10G "

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phupe avatar phupe commented on June 2, 2024

@fredjarlier , I added a python script to compoute the informatic resources required for mpiSORT depending on the size of the FASTQ file.

Print help:
python informaticResources.py -h

Example:
python informaticResources.py -c 40 -m 133 -s 1300

TODO:

  • check the script
  • modify the doc to show an example using this script

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phupe avatar phupe commented on June 2, 2024

the script grid_explorer.sh has been renamed into getSlurmNodesInfo.sh.

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fredjarlier avatar fredjarlier commented on June 2, 2024

Done in release-1.4

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