Comments (4)
the script grid_explorer.sh
provides very interesting information. As the hardware memory for each node is not dispalyed, I suggest to add the information retrived by:
sinfo -o "%20N %10c %m %25f %10G "
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@fredjarlier , I added a python script to compoute the informatic resources required for mpiSORT depending on the size of the FASTQ file.
Print help:
python informaticResources.py -h
Example:
python informaticResources.py -c 40 -m 133 -s 1300
TODO:
- check the script
- modify the doc to show an example using this script
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the script grid_explorer.sh
has been renamed into getSlurmNodesInfo.sh
.
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Done in release-1.4
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Related Issues (20)
- Update bgzf from HTSLIB
- Repair Release note link in README.md HOT 2
- replace existing SO in header HOT 1
- Optionally write bgz/sam/bam format HOT 52
- New feature in the ressource scripts HOT 3
- Add option to keep discordant or mate unmapped in results HOT 5
- Show an example of complete workflow with MPI tools HOT 1
- mpiSORT running issue when compress small buffer HOT 51
- Review MPI PACK and UNPACK when dispatch read HOT 1
- Compilation issue with GCC11 and openMPI4 HOT 2
- Add an option to write an entire SAM in output HOT 4
- Multiple input SAM files
- link with crypto in configure
- Add pthread check lib in configure.ac
- Problem with bam construction HOT 6
- Generate index on the fly with BAM
- Memory leaks v1.5.1 HOT 1
- Remove compilation warning HOT 2
- Refactoring for MPMD
- Remove IO bottle neck HOT 4
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