biogeeker Goto Github PK

stag

STAG: Species Tree from All Genes

supernova

10x Genomics Linked-Read Diploid De Novo Assembler

synnet-pipeline

Workflow for Building Microsynteny Networks

syntenyplotter

R package to draw syntenic plots in 3 different styles

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

tbtools-manual

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

tetep_genome

Denovo assembly and analysis of Oryza sativa ssp. indica Tetep genome

tirmite

Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

tkinter-gui-application-development-blueprints-second-edition

Tkinter GUI Application Development Blueprints Second Edition, published by Packt

tobias

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

tomatosuperpangenome

Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon

topcons2

Github for the TOPCONS2

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

tutorials

Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks

tutorials-1

Various tutorials about MD setup and analysis, protein-ligand docking, machine learning and lots of other interesting things.

uni-fold

An open-source platform for developing protein models beyond AlphaFold.

uni-gbsa

An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculation.

uorf

This is the project for uORF analysis

uorfs

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

vcfpytools

vcf file manipulation

vespa

VESPA: Very large-scale Evolutionary and Selective Pressure Analyses

wgap

Whole Genome Annotation Pipeline

wgdi-doc

ceshi

wgdi-example

zotero-addons

Zotero add-on to list and install add-ons in Zotero