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These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to follw
Unix, R and python tools for genomics and data science
A grammar of graphics for comparative genomics
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
tools for GROMACS
A deep learning framework for molecular docking
Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
Generating UTRs from SHort Reads
A series of Jupyter notebooks with Chinese comment that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.
Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
HyPhy: Hypothesis testing using Phylogenies
Detecting intron retention from RNA-Seq experiments
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Python library to facilitate genome assembly, annotation and comparative genomics
Pandas中文教程
Deep learning algorithms source code for beginners
LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解,记录自己的leetcode解题之路。)
Demonstrate all the questions on LeetCode in the form of animation.(用动画的形式呈现解LeetCode题目的思路)
An accurate GFF3/GTF lift over pipeline
DNA序列比对结果 可视化展示工具
ColabFold on your local PC
My blogs and code for machine learning. http://cnblogs.com/pinard
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.