biodepot Goto Github PK

aws-s3-explorer

Customized version of aws-s3-explorer

biodepot-launcher

biodepot-workflow-builder

:computer: GUI for creating bioinformatics workflows from :whale: Docker containers:

downloadurl-bwbwidgetimage

Docker image for Bwb downloadURL widget

dream9.5

Predicting Discontinuation of Docetaxel Treatment for Metastatic Castration-Resistant Prostate Cancer (mCRPC)

dtoxs_alignment

dtoxs_analysis

Docker image for Differential Expression Analysis on DToxS Data

fastbma

Fast, scalable, parallel and distributed inference of very large networks by Bayesian Model Averaging

fiji-clij

Fiji with GPU functionality

fiji-demo

gdc_genomic_workflows

guidock-vnc

guidock-x11

Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)

hotstarting-for-star-alignment

A hot-starting method for STAR Alignment.

kallisto-sam

Modified kallisto that outputs sam lines to stdout instead of tsv and pseudobam files

l1kpp

Faster more accurate processing of LINCS L1000 data

lincs-extractor

Docker container for web tool to explore LINCS metadata and slice LINCS cloud data

lincs_docker_scripts

Shell script pipelines using LINCS docker containers

lincs_rnaseq_cpp

Optimized tools for barcoded RNA-seq

lincs_rnaseq_cpp_old

Optimized software for barcoded Unique Molecular Identifier (UMI) RNAseq

morphicconsortiumwebsite

https://elijah1368.github.io/MorphicConsortium/

nanopore-gpu

nbdocker

A Jupyter Notebook extension for Docker

rna-seq-lambda

Rapid RNA-seq pipeline using AWS lambda functions for alignment

serverless-umi

smith-waterman-serverless

Serverless implementation of Smith-Waterman on all-vs-all human protein set

sratoolkit

Docker image for sratoolkit

star

Star aligner container with wrapper for quantification

taskperform_awslambda

Computational tasks performance in parallel using AWS Lambda and example

ubuntu-star

Minimal Ubuntu container with STAR aligner