Comments (3)
DarwinAwardWinner
commented on August 20, 2024
Proof of concept: DarwinAwardWinner@0a5f97e
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vobencha
commented on August 20, 2024
I like the idea of job names - ideally for all backends. How about a 'jobid' field in BiocParallelParam?
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vobencha
commented on August 20, 2024
'jobname' was added in -r105439.
r105439 | v.obenchain | 2015-06-24 12:10:56 -0700 (Wed, 24 Jun 2015) | 6 lines
modifications to BiocParallelParam and worker script:
- add 'jobname' field to BiocParallelParam
- capture stdout and stderr on workers (SnowParam, MulticoreParam only)
- write out log files by task (SnowParam, MulticoreParam only)
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Related Issues (20)
- Error in serialize(data, node$con, xdr = FALSE) : ignoring SIGPIPE signal HOT 5
- Performance (speed) degradation in MulticoreParam with default force.G = TRUE HOT 3
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- stop.on.error = FALSE for DoParam doesn't work as expected HOT 2
- Troubles with bplapply within function (using SnowParam on Windows) HOT 6
- MulticoreParam bplapply unable to restart upon interrupt HOT 1
- Increase depth of traceback beyond `tryCatch()` for bp* functions - possible enhancement HOT 1
- The running time isn't reduced when using bplapply()? HOT 3
- BiocParallel errors HOT 4
- Handle worker abort better HOT 1
- move Rmpi to Enhances: HOT 1
- "foreach" %in% loadedNamespaces() instead of "package:foreach" %in% search()? HOT 1
- BiocParallel errors：could not find function ".OLD_read_block" HOT 11
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- BiocParallel for parallelization in BEER: Error and GPU Compatibility HOT 8
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