biobrad Goto Github PK
Name: Brad Hart
Type: User
Company: University of South Australia
Bio: Bioinformatics / Microbiology University of South Australia
Blog: https://venterlab.org/
Brad Hart's Projects
ai_lecture_summariser
Turns 7000 word lectures into 1400 word summaries
bacmetscript
script for using bacmet databases
contigquality
Short Script to Generate read depth of contigs from assembled microbial genomes in tormes output folders
hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
koverage_report
Visualisation for Koverage Bioinformatics tool
new_tormes_report
Work in progress of recreating Tormes pipeline report using python
plasmidbot
A pipeline to identify plasmids in short read sequences
platon_convert
Extracts data from Platon results and converts to a dataframe
sla_matrix
Work related project
telstra-starter-repo
Starter repo for the Telstra backend Forage program
tormes
Making whole genome bacterial sequencing data analysis easy
tormes-meta-create
script to create samples_metadata.txt file for tormes
tormes-reinstall
tormesbot
Tormesbot is a script that I created to try to simplify user interaction with the awesome genomic pipeline 'Tormes' when interacting with a HPC.
toughbugs
A Tool for running popular Antimicrobial Resistance Software
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