biobit Goto Github PK

.github

atacseqqc

ATAC-seq Quality Control

auragpt

Customized Discord Bot for EVE Online

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bitcoinbook

Mastering Bitcoin 2nd Edition - Programming the Open Blockchain

chatgpt-discord-bot

Integrate ChatGPT into your own discord bot

cheat-sheets

This is my personal knowledge-base. Here you'll find code-snippets, technical documentation, and command reference for various tools, and technologies.

cnr-flow

CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.

cutand

Snakemake pipeline for cut and tag QC and peak calling with mark specific sensitivity

cuttag

Tools for CUT&RUN and CUT&Tag analyses

discourse

A platform for community discussion. Free, open, simple.

docs

SeAT Documentation

fella

FELLA: an R package for Metabolomics data enrichment through diffusion

hisat2

Graph-based alignment (Hierarchical Graph FM index)

hmmratac

HMMRATAC peak caller for ATAC-seq data

hohriver

CUT&RUN and CUT&Tag FASTQ -> bigwig pipeline

htslib

C library for high-throughput sequencing data formats

isa

in silico Strand Annealing

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

macs

MACS -- Model-based Analysis of ChIP-Seq

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sccut-tag_2020

Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)

setools

A R package with tools for working with the SummarizedExperiment class.

sra-tools

SRA Tools

stringtie

Transcript assembly and quantification for RNA-Seq

trimmomatic

Read trimming tool for Illumina NGS data.