Name: Berto Lab
Type: User
Company: Medical University of South Carolina
Bio: Computational Neurogenomicist Assistant Professor at MUSC.
Director of the Bioinformatic Core
Working on NGS and neuropsychiatric disorders.
Twitter: StefanoBerto83
Location: Charleston, South Carolina
Blog: bertolab.org
Berto Lab's Projects
10x Human Pilot for snRNA-seq with v3-generated data; 5 brain regions: n=12 homogenates, n=2 NeuN-sorted (NAc)
ABIDE Preprocessed Initiative
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
Weight-Topological-Overlap for gene co-expression networks
App for hosting gene expression/ontology data with Shiny
Pipeline for RNA-seq and ChIP-seq
Codes for Hippocampal Subfields project
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IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Intro to ChIPseq using HPC
MEF2C Het analysis for Harrington et al. 2019
RNA-seq analysis for primate NeuN+ and OLIG2+ sorted nuclei from human, chimpanzee and rhesus macaque prefrontal cortex
Poster for Biology of Genomes 2019 (#bog19) on recount-brain
Codes for Schizophrenia CellType project
RNA-seq and snRNA-seq Analysis for Suprachiasmatic Nucleus
SEACR: Sparse Enrichment Analysis for CUT&RUN
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My Personal Website
Codes for Within Subject Memory Encoding project