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ascat

ASCAT copy number R package

bioinformatics_workshop_march2019

cnvfilter

R package to remove false positives of CNV calling tools by using SNV calls

compatfreq

R package to check the relation between samples, if one derives from the other, if they come from the same individual...

copynumberplots

R package to create plots representing copy number data using karyoploteR

findfocals

A small R package to find focal genomic gains and losses in SNP array data

genomedrawer

A small javascript library to create genome/protein annotation images similar to those on Ensembl and UCSC.

genoploter

Data plotting on gene structures

jsdas

Javascript client library for the Distributed Annotation System

karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

karyoploter_questions

Data, code and images used to answer questions about karyoploteR by email, on biostars, on github...

karyoploter_tutorial

Examples on how to use the karyoploteR R/Bioconductor package

predasam

Modified version of R/Bioconductor PREDA package with SAM statistics re-enabled

regioner

An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests

regionereload

structuralvariantannotation

R package designed to simplify structural variant analysis