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acquisition2p_class

For managing 2P imaging datasets from preprocessing to activity trace extraction

analysis-tools

Code for analyzing data saved by the Open Ephys GUI

autocluster

ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

calciumsignalextract

Added files

constrained-foopsi

Implementation of the constrained deconvolution spike inference algorithm in Matlab

coxlab-website

freedomscope

klustakwik

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard hard EM algorithm).

klustakwik2

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures

lfdisplay

GUI for a light field microscope

mwm_toolbox

Code to analyze spatial search strategies in Morris Water Maze experiments

mworks

A framework for conducting realtime neurophysiology and psychophysics experiments

pymba

Python wrapper for the Allied Vision Technologies (AVT) Vimba C API

pyqtgraph

pyqtgraph main development repository

raytracer

Quick-and-easy approach to ray-tracing

sima

Python package for analysis of dynamic fluorescence microscopy data

spikedetekt

Electrophysiological spike detection for large dense electrode arrays

spikedetekt2

stereovision

Library and utilities for 3d reconstruction from stereo cameras.

test

virtual-reality

Source code for LBP's virtual reality setup